millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-12-22 10:38:16 +00:00
Code Issues Releases Packages Activity

Updat Pasteur doc

Browse source
This commit is contained in:
Remi Planel 2019-07-30 16:12:30 +02:00
parent f9a2baf614
commit be28a34839
1 changed files with 6 additions and 4 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

10
docs/pasteur.md
View file

@ -8,14 +8,16 @@ To use, run the pipeline with `-profile pasteur`. This will download and launch
## Running the workflow on the Pasteur cluster
>Nextflow is not installed by default on the Pasteur cluster.
Nextflow is not installed by default on the Pasteur cluster.
- Install Nextflow : [here](https://www.nextflow.io/docs/latest/getstarted.html#)
>Nextflow manages each process as a separate job that is submitted to the cluster by using the sbatch command.
Nextflow manages each process as a separate job that is submitted to the cluster by using the sbatch command.
Nextflow shouldn't run directly on the submission node but on a compute node.
The compute nodes don't have access to internet so you need to run it offline. To do that:
1. Create a virtualenv to install nf-core in order to get the workflow
The compute nodes don't have access to internet so you need to run it offline.
To do that:
1. Create a virtualenv to install nf-core
```bash
module purge
module load Python/3.6.0