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Add microbiome screening profile for NT sized MALT runs for nf-core/eager@SHH

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James A. Fellows Yates 2020-08-11 09:18:36 +02:00 committed by GitHub
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commit c3fa87e4bc
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conf/pipeline/eager/shh.config
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@ -65,6 +65,18 @@ process {
}
profiles {
microbiome_screening {
process {
// Assuming NCBI NT-sized DB
withName: malt {
maxRetries = 1
memory = 1900.GB
cpus = 112
time = 1440.h
queue = 'supercruncher'
}
}
}
// IMPORTANT this profile is not reproducible due to hardcoded paths. For initial/automated screening ONLY.
hops {
params {