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Add overhead for get_software_versions

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James Fellows Yates 2022-06-03 14:21:41 +02:00
parent df0429ce9d
commit c40ebb9acf
1 changed files with 2 additions and 2 deletions
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4
conf/pipeline/eager/eva.config
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@ -192,8 +192,8 @@ process {
withName:get_software_versions { withName:get_software_versions {
cache = false cache = false
clusterOptions = { "-S /bin/bash -V -l h=!(bionode06)" } clusterOptions = { "-S /bin/bash -V -l h=!(bionode06)" }
beforeScript = 'export JAVA_TOOL_OPTIONS="-XX:ParallelGCThreads=1 -Xmx512m"; export OPENBLAS_NUM_THREADS=1; export OMP_NUM_THREADS=1' beforeScript = 'export JAVA_TOOL_OPTIONS="-XX:ParallelGCThreads=1"; export OPENBLAS_NUM_THREADS=1; export OMP_NUM_THREADS=1'
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toMega())}M" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toMega() * 2)}M" }
errorStrategy = { task.exitStatus in [1,143,137,104,134,139,140] ? 'retry' : 'finish' } errorStrategy = { task.exitStatus in [1,143,137,104,134,139,140] ? 'retry' : 'finish' }
} }