millironx/nf-configs
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Merge remote-tracking branch 'origin'

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This commit is contained in:
Emelie Nilsso 2020-11-23 21:34:08 +01:00
commit c47088cda2
2 changed files with 4 additions and 5 deletions
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1
conf/shh.config
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@ -15,7 +15,6 @@ cleanup = true
singularity { singularity {
enabled = true enabled = true
autoMounts = true autoMounts = true
runOptions = '-B /run/shm:/run/shm'
cacheDir = "/projects1/singularity_scratch/cache/" cacheDir = "/projects1/singularity_scratch/cache/"
} }

8
docs/google.md
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@ -14,21 +14,21 @@ nextflow run nf-core/rnaseq -profile test,google --google_bucket <gs://your_buck
### Required Parameters ### Required Parameters
#### `--google-bucket` #### `--google_bucket`
The Google Cloud Storage bucket location to be used as a Nextflow work directory. Can also be specified with (`-w gs://your_bucket/work`). The Google Cloud Storage bucket location to be used as a Nextflow work directory. Can also be specified with (`-w gs://your_bucket/work`).
### Optional Parameters ### Optional Parameters
#### `--google-zone` #### `--google_zone`
The Google zone where the computation is executed in Compute Engine VMs. Multiple zones can be provided separating them by a comma. Default (`europe-west2-c`). The Google zone where the computation is executed in Compute Engine VMs. Multiple zones can be provided separating them by a comma. Default (`europe-west2-c`).
#### `--google-preemptible` #### `--google_preemptible`
Enables the usage of preemptible virtual machines with a retry error statergy for up to 5 retries. Default (`true`). Enables the usage of preemptible virtual machines with a retry error statergy for up to 5 retries. Default (`true`).
#### `--google-debug` #### `--google_debug`
Copies the /google debug directory from the VM to the task bucket directory. Useful for debugging. Default (`false`). Copies the /google debug directory from the VM to the task bucket directory. Useful for debugging. Default (`false`).