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Update shh.config
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1 changed files with 5 additions and 3 deletions
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@ -69,7 +69,9 @@ profiles {
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big_data {
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params {
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config_profile_description = 'nf-core/eager big-data SHH profile provided by nf-core/configs'
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// Specific nf-core/configs params
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config_profile_contact = 'James Fellows Yates (@jfy133)'
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config_profile_description = 'nf-core/eager big-data SHH profile provided by nf-core/configs'
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}
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executor {
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@ -80,7 +82,7 @@ profiles {
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maxRetries = 2
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withName: malt {
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withName: 'malt' {
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maxRetries = 1
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memory = { task.attempt > 1 ? 1900.GB : 725.GB }
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cpus = { task.attempt > 1 ? 112 : 64 }
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@ -88,7 +90,7 @@ profiles {
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queue = { task.memory > 756.GB ? 'supercruncher' : 'long' }
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}
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withName: hostremoval_input_fastq {
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withName: 'hostremoval_input_fastq' {
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cpus = { check_max( 1, 'cpus' ) }
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memory = { check_max( 32.GB * task.attempt, 'memory' ) }
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time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 2.h }
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