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Update shh.config

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James A. Fellows Yates 2021-02-04 08:06:35 +01:00 committed by GitHub
parent 82fe8a04be
commit c515a401c7
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1 changed files with 5 additions and 3 deletions
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8
conf/pipeline/eager/shh.config
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@ -69,7 +69,9 @@ profiles {
big_data { big_data {
params { params {
config_profile_description = 'nf-core/eager big-data SHH profile provided by nf-core/configs' // Specific nf-core/configs params
config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_description = 'nf-core/eager big-data SHH profile provided by nf-core/configs'
} }
executor { executor {
@ -80,7 +82,7 @@ profiles {
maxRetries = 2 maxRetries = 2
withName: malt { withName: 'malt' {
maxRetries = 1 maxRetries = 1
memory = { task.attempt > 1 ? 1900.GB : 725.GB } memory = { task.attempt > 1 ? 1900.GB : 725.GB }
cpus = { task.attempt > 1 ? 112 : 64 } cpus = { task.attempt > 1 ? 112 : 64 }
@ -88,7 +90,7 @@ profiles {
queue = { task.memory > 756.GB ? 'supercruncher' : 'long' } queue = { task.memory > 756.GB ? 'supercruncher' : 'long' }
} }
withName: hostremoval_input_fastq { withName: 'hostremoval_input_fastq' {
cpus = { check_max( 1, 'cpus' ) } cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 32.GB * task.attempt, 'memory' ) } memory = { check_max( 32.GB * task.attempt, 'memory' ) }
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 2.h } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 2.h }