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Merge pull request #244 from oalmelid/master

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eddie.conf: Add TMPDIR and mount for it to singularity configuration + Migrate to BioinformaticsResources for genomes.
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Øyvind Almelid 2021-05-25 10:03:05 +01:00 committed by GitHub
commit c75ceec35d
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1 changed files with 3 additions and 3 deletions
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conf/eddie.config
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@ -31,7 +31,7 @@ process {
params { params {
saveReference = true saveReference = true
// iGenomes reference base // iGenomes reference base
igenomes_base = '/exports/igmm/eddie/NextGenResources/igenomes' igenomes_base = '/exports/igmm/eddie/BioinformaticsResources/igenomes'
max_memory = 384.GB max_memory = 384.GB
max_cpus = 32 max_cpus = 32
max_time = 240.h max_time = 240.h
@ -42,8 +42,8 @@ env {
} }
singularity { singularity {
envWhitelist = "SINGULARITY_TMPDIR" envWhitelist = "SINGULARITY_TMPDIR,TMPDIR"
runOptions = '-p' runOptions = '-p -B "$TMPDIR"'
enabled = true enabled = true
autoMounts = true autoMounts = true
} }