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Add TMPDIR and mount for it to singularity configuration

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This commit is contained in:
Øyvind Almelid 2021-05-25 09:54:08 +01:00
parent 0ab9edde72
commit f6578f727d
1 changed files with 3 additions and 3 deletions
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6
conf/eddie.config
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@ -31,7 +31,7 @@ process {
params {
saveReference = true
// iGenomes reference base
igenomes_base = '/exports/igmm/eddie/NextGenResources/igenomes'
igenomes_base = '/exports/igmm/eddie/BioinformaticsResources/igenomes'
max_memory = 384.GB
max_cpus = 32
max_time = 240.h
@ -42,8 +42,8 @@ env {
}
singularity {
envWhitelist = "SINGULARITY_TMPDIR"
runOptions = '-p'
envWhitelist = "SINGULARITY_TMPDIR,TMPDIR"
runOptions = '-p -B "$TMPDIR"'
enabled = true
autoMounts = true
}