millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Merge pull request #244 from oalmelid/master

Browse source 
eddie.conf: Add TMPDIR and mount for it to singularity configuration + Migrate to BioinformaticsResources for genomes.
This commit is contained in:
Øyvind Almelid 2021-05-25 10:03:05 +01:00 committed by GitHub
commit c75ceec35d
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
conf/eddie.config
View file

@ -31,7 +31,7 @@ process {
params {
saveReference = true
// iGenomes reference base
igenomes_base = '/exports/igmm/eddie/NextGenResources/igenomes'
igenomes_base = '/exports/igmm/eddie/BioinformaticsResources/igenomes'
max_memory = 384.GB
max_cpus = 32
max_time = 240.h
@ -42,8 +42,8 @@ env {
}
singularity {
envWhitelist = "SINGULARITY_TMPDIR"
runOptions = '-p'
envWhitelist = "SINGULARITY_TMPDIR,TMPDIR"
runOptions = '-p -B "$TMPDIR"'
enabled = true
autoMounts = true
}