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Add ABiMS - side files
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3 changed files with 3 additions and 1 deletions
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.github/workflows/main.yml
vendored
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.github/workflows/main.yml
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@ -16,7 +16,7 @@ jobs:
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needs: test_all_profiles
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needs: test_all_profiles
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strategy:
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strategy:
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matrix:
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matrix:
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profile: ['awsbatch', 'bi','bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga_med', 'cfc', 'cfc_dev', 'crick', 'denbi_qbic', 'ebc', 'genotoul', 'genouest', 'gis', 'google', 'hebbe', 'icr_davros', 'kraken', 'mpcdf', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hpc', 'uppmax', 'utd_ganymede', 'uzh']
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profile: ['abims', 'awsbatch', 'bi','bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga_med', 'cfc', 'cfc_dev', 'crick', 'denbi_qbic', 'ebc', 'genotoul', 'genouest', 'gis', 'google', 'hebbe', 'icr_davros', 'kraken', 'mpcdf', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hpc', 'uppmax', 'utd_ganymede', 'uzh']
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steps:
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steps:
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- uses: actions/checkout@v1
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- uses: actions/checkout@v1
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- name: Install Nextflow
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- name: Install Nextflow
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@ -94,6 +94,7 @@ See [`nf-core/configs/docs`](https://github.com/nf-core/configs/tree/master/docs
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Currently documentation is available for the following systems:
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Currently documentation is available for the following systems:
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* [ABIMS](docs/abims.md)
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* [AWSBATCH](docs/awsbatch.md)
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* [AWSBATCH](docs/awsbatch.md)
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* [BIGPURPLE](docs/bigpurple.md)
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* [BIGPURPLE](docs/bigpurple.md)
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* [BI](docs/bi.md)
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* [BI](docs/bi.md)
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@ -10,6 +10,7 @@
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//Please use a new line per include Config section to allow easier linting/parsing. Thank you.
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//Please use a new line per include Config section to allow easier linting/parsing. Thank you.
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profiles {
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profiles {
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abims { includeConfig "${params.custom_config_base}/conf/abims.config" }
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awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
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awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
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bi { includeConfig "${params.custom_config_base}/conf/bi.config" }
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bi { includeConfig "${params.custom_config_base}/conf/bi.config" }
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bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
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bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
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