millironx/nf-configs
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Add ABiMS - side files

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lecorguille 2020-10-22 23:23:56 +02:00
parent 23ba1c58b1
commit c974972585
3 changed files with 3 additions and 1 deletions
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2
.github/workflows/main.yml vendored
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@ -16,7 +16,7 @@ jobs:
needs: test_all_profiles needs: test_all_profiles
strategy: strategy:
matrix: matrix:
profile: ['awsbatch', 'bi','bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga_med', 'cfc', 'cfc_dev', 'crick', 'denbi_qbic', 'ebc', 'genotoul', 'genouest', 'gis', 'google', 'hebbe', 'icr_davros', 'kraken', 'mpcdf', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hpc', 'uppmax', 'utd_ganymede', 'uzh'] profile: ['abims', 'awsbatch', 'bi','bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga_med', 'cfc', 'cfc_dev', 'crick', 'denbi_qbic', 'ebc', 'genotoul', 'genouest', 'gis', 'google', 'hebbe', 'icr_davros', 'kraken', 'mpcdf', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hpc', 'uppmax', 'utd_ganymede', 'uzh']
steps: steps:
- uses: actions/checkout@v1 - uses: actions/checkout@v1
- name: Install Nextflow - name: Install Nextflow

1
README.md
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@ -94,6 +94,7 @@ See [`nf-core/configs/docs`](https://github.com/nf-core/configs/tree/master/docs
Currently documentation is available for the following systems: Currently documentation is available for the following systems:
* [ABIMS](docs/abims.md)
* [AWSBATCH](docs/awsbatch.md) * [AWSBATCH](docs/awsbatch.md)
* [BIGPURPLE](docs/bigpurple.md) * [BIGPURPLE](docs/bigpurple.md)
* [BI](docs/bi.md) * [BI](docs/bi.md)

1
nfcore_custom.config
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@ -10,6 +10,7 @@
//Please use a new line per include Config section to allow easier linting/parsing. Thank you. //Please use a new line per include Config section to allow easier linting/parsing. Thank you.
profiles { profiles {
abims { includeConfig "${params.custom_config_base}/conf/abims.config" }
awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" } awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
bi { includeConfig "${params.custom_config_base}/conf/bi.config" } bi { includeConfig "${params.custom_config_base}/conf/bi.config" }
bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" } bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }