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Update sanger.md

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Anthony Underwood 2021-04-21 20:24:08 +01:00 committed by GitHub
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@ -15,7 +15,7 @@ Nextflow manages each process as a separate job that is submitted to the cluster
Nextflow shouldn't run directly on the submission node but on a compute node. Nextflow shouldn't run directly on the submission node but on a compute node.
To do so make a shell script with a similar structure to the following code and submit with `bsub < $PWD/my_script.sh` To do so make a shell script with a similar structure to the following code and submit with `bsub < $PWD/my_script.sh`
``` ```bash
#!/bin/bash #!/bin/bash
#BSUB -o /path/to/a/log/dir/%J.o #BSUB -o /path/to/a/log/dir/%J.o
#BSUB -e /path/to/a/log/dir//%J.e #BSUB -e /path/to/a/log/dir//%J.e
@ -44,4 +44,3 @@ if [[ $status -eq 0 ]]; then
rm -r /path/to/some/dir/work rm -r /path/to/some/dir/work
fi fi
``` ```