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Update BWA settings based on feedback
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1 changed files with 27 additions and 4 deletions
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@ -3,8 +3,12 @@
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params {
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// Specific nf-core/configs params
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config_profile_contact = 'James Fellows Yates (@jfy133)'
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config_profile_description = 'JFY nf-core/eager SHH profile provided by nf-core/configs'
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config_profile_description = 'nf-core/eager SHH profile provided by nf-core/configs'
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igenomes_base = "/projects1/public_data/igenomes/"
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// default BWA
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bwaalnn = 0.04
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bwaalnl = 32
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}
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// Specific nf-core/eager process configuration
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@ -18,7 +22,26 @@ process {
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}
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}
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params {
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bwaalnn = 0.01
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bwaalnl = 32
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profiles {
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pathogen_loose {
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params {
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config_profile_description = 'Pathogen (loose) MPI-SHH profile, provided by nf-core/configs.'
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bwaalnn = 0.01
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bwaalnl = 16
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}
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}
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pathogen_strict {
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params {
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config_profile_description = 'Pathogen (strict) MPI-SHH SDAG profile, provided by nf-core/configs.'
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bwaalnn = 0.1
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bwaalnl = 32
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}
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}
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human {
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params {
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config_profile_description = 'Human MPI-SHH SDAG profile, provided by nf-core/configs.'
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bwaalnn = 0.01
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bwaalnl = 16500
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}
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}
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}
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