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47 lines
1.2 KiB
Text
47 lines
1.2 KiB
Text
// Profile config names for nf-core/configs
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params {
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// Specific nf-core/configs params
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config_profile_contact = 'James Fellows Yates (@jfy133)'
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config_profile_description = 'nf-core/eager SHH profile provided by nf-core/configs'
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igenomes_base = "/projects1/public_data/igenomes/"
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// default BWA
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bwaalnn = 0.04
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bwaalnl = 32
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}
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// Specific nf-core/eager process configuration
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process {
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withName: malt {
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maxRetries = 1
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memory = { task.attempt > 1 ? 1900.GB : 725.GB }
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cpus = { task.attempt > 1 ? 112 : 64 }
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time = 1440.h
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queue = { task.memory > 756.GB ? 'supercruncher' : 'long' }
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}
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}
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profiles {
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pathogen_loose {
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params {
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config_profile_description = 'Pathogen (loose) MPI-SHH profile, provided by nf-core/configs.'
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bwaalnn = 0.01
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bwaalnl = 16
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}
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}
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pathogen_strict {
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params {
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config_profile_description = 'Pathogen (strict) MPI-SHH SDAG profile, provided by nf-core/configs.'
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bwaalnn = 0.1
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bwaalnl = 32
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}
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}
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human {
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params {
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config_profile_description = 'Human MPI-SHH SDAG profile, provided by nf-core/configs.'
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bwaalnn = 0.01
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bwaalnl = 16500
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}
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}
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}
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