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Use new and improved GENCODE+ERCC annotation

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This commit is contained in:
Olga Botvinnik 2019-06-26 17:56:26 -07:00
parent cfcb533b95
commit d1983f8acd
1 changed files with 2 additions and 2 deletions
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4
conf/czbiohub_aws.config
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@ -65,13 +65,13 @@ params {
genomes { genomes {
'GRCh38' { 'GRCh38' {
fasta = "${params.gencode_base}/human/v30/GRCh38.p12.genome.ERCC92.fa" fasta = "${params.gencode_base}/human/v30/GRCh38.p12.genome.ERCC92.fa"
gtf = "${params.gencode_base}/human/v30/gencode.v30.annotation.ERCC92.gene_type.gtf" gtf = "${params.gencode_base}/human/v30/gencode.v30.annotation.ERCC92.gtf"
transcript_fasta = "${params.gencode_base}/human/v30/gencode.v30.transcripts.ERCC92.fa" transcript_fasta = "${params.gencode_base}/human/v30/gencode.v30.transcripts.ERCC92.fa"
star = "${params.gencode_base}/human/v30/STARIndex/" star = "${params.gencode_base}/human/v30/STARIndex/"
} }
'GRCm38' { 'GRCm38' {
fasta = "${params.gencode_base}/mouse/vM21/GRCm38.p6.genome.ERCC92.fa" fasta = "${params.gencode_base}/mouse/vM21/GRCm38.p6.genome.ERCC92.fa"
gtf = "${params.gencode_base}/mouse/vM21/gencode.vM21.annotation.ERCC92.gene_type.gtf" gtf = "${params.gencode_base}/mouse/vM21/gencode.vM21.annotation.ERCC92.gtf"
transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa" transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa"
} }
} }