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fix typo

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This commit is contained in:
Ramprasad Neethiraj 2022-04-19 13:21:51 +02:00
parent 32207a2402
commit d39bec05dc
1 changed files with 2 additions and 2 deletions
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4
conf/pipeline/raredisease/hasta.config
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@ -7,11 +7,11 @@ process {
cpus = { check_max( 16 * task.attempt, 'cpus' ) } cpus = { check_max( 16 * task.attempt, 'cpus' ) }
memory = { check_max( 80.GB * task.attempt, 'memory' ) } memory = { check_max( 80.GB * task.attempt, 'memory' ) }
} }
withname: BCFTOOLS_VIEW { withName: BCFTOOLS_VIEW {
if (params.genome == 'GRCh37') { if (params.genome == 'GRCh37') {
ext.args = '--output-type v --apply-filters PASS --exclude "INFO/clinical_genomics_mipAF > 0.40 | INFO/swegenAF > 0.40 | INFO/clingen_ngiAF > 0.40 | INFO/gnomad_svAF > 0.40 "' ext.args = '--output-type v --apply-filters PASS --exclude "INFO/clinical_genomics_mipAF > 0.40 | INFO/swegenAF > 0.40 | INFO/clingen_ngiAF > 0.40 | INFO/gnomad_svAF > 0.40 "'
} else if (params.genome == 'GRCh38') { } else if (params.genome == 'GRCh38') {
ext.args = '--output-type v --apply-filters PASS --exclude "INFO/swegenAF > 0.40"' ext.args = '--output-type v --apply-filters PASS --exclude "INFO/swegen_FRQ > 0.40"'
} }
publishDir = [ publishDir = [
enabled: false, enabled: false,