millironx/nf-configs
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Merge pull request #102 from phue/cbe_singularity

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cbe: load singularity/3.4.1
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Alexander Peltzer 2019-12-06 10:21:55 +01:00 committed by GitHub
commit da547b4ce3
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2 changed files with 2 additions and 1 deletions
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2
conf/cbe.config
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@ -7,7 +7,7 @@ params {
process { process {
executor = 'slurm' executor = 'slurm'
module = 'singularity/3.2.1' module = 'singularity/3.4.1'
queue = { task.memory <= 170.GB ? 'c' : 'm' } queue = { task.memory <= 170.GB ? 'c' : 'm' }
clusterOptions = { task.time <= 8.h ? '--qos short': task.time <= 48.h ? '--qos medium' : '--qos long' } clusterOptions = { task.time <= 8.h ? '--qos short': task.time <= 48.h ? '--qos medium' : '--qos long' }
} }

1
nfcore_custom.config
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@ -49,6 +49,7 @@ profiles {
params { params {
// This is a groovy map, not a nextflow parameter set // This is a groovy map, not a nextflow parameter set
hostnames = [ hostnames = [
cbe: ['.cbe.vbc.ac.at'],
crick: ['.thecrick.org'], crick: ['.thecrick.org'],
genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'], genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'],
genouest: ['.genouest.org'], genouest: ['.genouest.org'],