1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-13 05:03:10 +00:00

Update ebc.md

This commit is contained in:
marcel-keller 2020-03-09 17:07:03 +02:00 committed by GitHub
parent 8e3803e4d7
commit dcb478c904
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23

View file

@ -3,6 +3,8 @@
All nf-core pipelines have been successfully configured for use on the [Estonian Biocentre (EBC)](https://genomics.ut.ee/en/about-us/estonian-biocentre) cluster at the [High Performance Computing Center](https://hpc.ut.ee/en) of the the University of Tartu.
To use, run the pipeline with `-profile ebc`. This will download and launch the [`ebc.config`](../conf/ebc.config) which has been pre-configured with a setup suitable for the EBC cluster. Using this profile, currently, a conda environment containing all of the required software will be downloaded and stored in a central location.
> :warning: You must install your own [conda binary](conda.io) to run nf-core pipelines in a conda environment. Running with singularity will be added soon.
The profile will put a maximum job limit of 12 GB, 20 CPUs and a maximum wall time of 120 hours.
NB: You will need an account to use the HPC cluster on EBC cluster in order to run the pipeline. If in doubt contact IT.