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update sarek munin config

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This commit is contained in:
MaxUlysse 2020-03-11 14:01:28 +01:00
parent d7564ff6e1
commit dd1ddf864b
1 changed files with 13 additions and 7 deletions
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20
conf/pipeline/sarek/munin.config
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@ -1,4 +1,4 @@
// Profile config names for nf-core/configs // sarek/munin specific profile config
params { params {
// Specific nf-core/configs params // Specific nf-core/configs params
@ -6,17 +6,23 @@ params {
config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs' config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs'
// Specific nf-core/sarek params // Specific nf-core/sarek params
annotation_cache = true annotation_cache = true
pon = '/data1/PON/vcfs/BTB.PON.vcf.gz' cadd_cache = true
pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi' cadd_indels = '/data1/cache/CADD/v1.4/InDels.tsv.gz'
snpEff_cache = '/data1/cache/snpEff/' cadd_indels_tbi = '/data1/cache/CADD/v1.4/InDels.tsv.gz.tbi'
vep_cache = '/data1/cache/VEP/' cadd_wg_snvs = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz'
cadd_wg_snvs_tbi = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz.tbi'
pon = '/data1/PON/vcfs/BTB.PON.vcf.gz'
pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi'
snpeff_cache = '/data1/cache/snpEff/'
vep_cache = '/data1/cache/VEP/'
vep_cache_version = 95
} }
// Specific nf-core/sarek process configuration // Specific nf-core/sarek process configuration
process { process {
withLabel:sentieon { withLabel:sentieon {
module = {params.sentieon ? 'sentieon/201808.05' : null} module = {params.sentieon ? 'sentieon/201911.00' : null}
container = {params.sentieon ? null : container} container = {params.sentieon ? null : container}
} }
} }