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Java overhead processes list updated

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Added all processes calling GATK for Mutect2 variant calling
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ameynert 2021-03-30 16:21:53 +01:00 committed by GitHub
parent adfb5366b9
commit e5f2a63079
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1 changed files with 18 additions and 0 deletions
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18
conf/pipeline/sarek/eddie.config
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@ -30,4 +30,22 @@ process {
withName:GenotypeGVCFs { withName:GenotypeGVCFs {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
} }
withName:Mutect2 {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName:MergeMutect2Stats {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName:PileupSummariesForMutect2 {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName:MergePileupSummaries {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName:CalculateContamination {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
withName:FilterMutect2Calls {
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
}
} }