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Update shh.config

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James A. Fellows Yates 2021-02-03 20:13:09 +01:00 committed by GitHub
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commit eb725f9ea3
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conf/pipeline/eager/shh.config
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@ -84,6 +84,12 @@ profiles {
queue = { task.memory > 756.GB ? 'supercruncher' : 'long' } queue = { task.memory > 756.GB ? 'supercruncher' : 'long' }
} }
withName: hostremoval_input_fastq {
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 32.GB * task.attempt, 'memory' ) }
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 2.h }
}
withLabel:'sc_tiny'{ withLabel:'sc_tiny'{
cpus = { check_max( 1, 'cpus' ) } cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 2.GB * task.attempt, 'memory' ) } memory = { check_max( 2.GB * task.attempt, 'memory' ) }