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Merge pull request #81 from maxibor/master

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Update shh doc
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James A. Fellows Yates 2019-10-28 20:02:27 +01:00 committed by GitHub
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@ -10,7 +10,8 @@ To use, run the pipeline with `-profile shh`. This will download and launch the
however this will likely change to a read-only directory in the future that will be managed by IT. however this will likely change to a read-only directory in the future that will be managed by IT.
Note that **the configuration file is currently optimised for `nf-core/eager`**. It will submit to the short queue but with a walltime of 2 hours. This configuration will automatically choose the correct SLURM queue (`short`,`medium`,`long`,`supercruncher`) depending on the time and memory required by each process.
Please note that there is no `supercruncher` queue on CDAG.
>NB: You will need an account and VPN access to use the cluster at MPI-SHH in order to run the pipeline. If in doubt contact IT. >NB: You will need an account and VPN access to use the cluster at MPI-SHH in order to run the pipeline. If in doubt contact IT.