millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Remove work_dir option.

Browse source
This commit is contained in:
Venkat Malladi 2021-11-18 17:52:24 -06:00
parent 13a8d7aebe
commit ed4c1d5f22
2 changed files with 2 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
conf/azurebatch.config
View file

@ -9,7 +9,6 @@ params {
batch_key = false batch_key = false
storage_name = 'platinumgenomes' storage_name = 'platinumgenomes'
sas_token = 'sv=2019-02-02&se=2050-01-01T08%3A00%3A00Z&si=prod&sr=c&sig=FFfZ0QaDcnEPQmWsshtpoYOjbzd4jtwIWeK%2Fc4i9MqM%3D' sas_token = 'sv=2019-02-02&se=2050-01-01T08%3A00%3A00Z&si=prod&sr=c&sig=FFfZ0QaDcnEPQmWsshtpoYOjbzd4jtwIWeK%2Fc4i9MqM%3D'
work_dir = false
} }
docker { docker {
@ -24,4 +23,3 @@ azure.batch.autoPoolMode = true
azure.storage.accountName = params.storage_name azure.storage.accountName = params.storage_name
azure.storage.sasToken = params.sas_token azure.storage.sasToken = params.sas_token
process.executor = 'azurebatch' process.executor = 'azurebatch'
workDir = params.work_dir

5
docs/azurebatch.md
View file

@ -25,11 +25,10 @@ The Azure Blob Storage name. Example is currently [Illumina Platinum Genomes](ht
The Azure Blob Storage shared access signature token. Example is currently [Illumina Platinum Genomes](https://docs.microsoft.com/en-us/azure/open-datasets/dataset-illumina-platinum-genomes?tabs=azure-storage). **This must be changed to your specific storage account.** The Azure Blob Storage shared access signature token. Example is currently [Illumina Platinum Genomes](https://docs.microsoft.com/en-us/azure/open-datasets/dataset-illumina-platinum-genomes?tabs=azure-storage). **This must be changed to your specific storage account.**
## Optional Parameters
### `--work_dir` ### `-w`
The Azure Blob container to be used as Nextflow work directory. Can also be specified with (`-w az://work`). The Azure Blob container to be used as Nextflow work directory (`-w az://work`).
## Azure Batch Setup ## Azure Batch Setup