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Merge pull request #142 from nf-core/olgabot-patch-1

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Add AaegL5.0 genome to czbiohub_aws
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Olga Botvinnik 2020-03-17 16:46:12 -07:00 committed by GitHub
commit f414b4c52d
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7
conf/czbiohub_aws.config
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@ -50,6 +50,7 @@ params {
// No final slash because it's added later // No final slash because it's added later
gencode_base = "s3://czbiohub-reference/gencode" gencode_base = "s3://czbiohub-reference/gencode"
transgenes_base = "s3://czbiohub-reference/transgenes" transgenes_base = "s3://czbiohub-reference/transgenes"
refseq_base = "s3://czbiohub-reference/ncbi/genomes/refseq/"
// AWS configurations // AWS configurations
awsregion = "us-west-2" awsregion = "us-west-2"
@ -79,6 +80,12 @@ params {
transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa" transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa"
star = "${params.gencode_base}/mouse/vM21/STARIndex/" star = "${params.gencode_base}/mouse/vM21/STARIndex/"
} }
'AaegL5.0' {
fasta = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/GCF_002204515.2_AaegL5.0_genomic.fna"
gtf = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/GCF_002204515.2_AaegL5.0_genomic.gtf"
bed = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/GCF_002204515.2_AaegL5.0_genomic.bed"
star = "${params.refseq_base}/invertebrate/Aedes_aegypti/GCF_002204515.2_AaegL5.0/nf-core--rnaseq/reference_genome/star/"
}
} }
transgenes { transgenes {