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update uppmax specific sarek config

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This commit is contained in:
MaxUlysse 2020-09-25 08:33:53 +02:00
parent 87c757dc47
commit fbe7bd133a
1 changed files with 4 additions and 4 deletions
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8
conf/pipeline/sarek/uppmax.config
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@ -4,18 +4,18 @@ params {
config_profile_contact = 'Maxime Garcia (@MaxUlysse)' config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs' config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs'
singleCPUmem = 7000.MB single_cpu_mem = 7000.MB
// Just useful until iGenomes is updated on UPPMAX // Just useful until iGenomes is updated on UPPMAX
igenomeIgnore = true igenomes_ignore = true
genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle' genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle'
} }
def hostname = "hostname".execute().text.trim() def hostname = "hostname".execute().text.trim()
if (hostname ==~ "r.*") { if (hostname ==~ "r.*") {
params.singleCPUmem = 6400.MB params.single_cpu_mem = 6400.MB
} }
if (hostname ==~ "i.*") { if (hostname ==~ "i.*") {
params.singleCPUmem = 15.GB params.single_cpu_mem = 15.GB
} }