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Merge pull request #332 from projectoriented/hasta/markdupe_remove_cpus

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picard md is single threaded
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Mei Wu 2022-02-23 16:40:57 +01:00 committed by GitHub
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conf/pipeline/raredisease/hasta.config
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@ -1,8 +1,7 @@
process { process {
withName:'PICARD_MARKDUPLICATES' { withName:'PICARD_MARKDUPLICATES' {
cpus = { check_max( 13 * task.attempt, 'cpus' ) } memory = { check_max( 90.GB * task.attempt, 'memory' ) }
memory = { check_max( 130.GB * task.attempt, 'memory' ) }
} }
withName:'DEEPVARIANT' { withName:'DEEPVARIANT' {
cpus = { check_max( 16 * task.attempt, 'cpus' ) } cpus = { check_max( 16 * task.attempt, 'cpus' ) }