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6
.github/workflows/main.yml
vendored
6
.github/workflows/main.yml
vendored
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@ -23,9 +23,13 @@ jobs:
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run: |
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run: |
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wget -qO- get.nextflow.io | bash
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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sudo mv nextflow /usr/local/bin/
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echo ~
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touch ~/dummy.config
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touch ~/dummy.config
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- name: Check ${{ matrix.profile }} profile
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- name: Check ${{ matrix.profile }} profile
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env:
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env:
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SCRATCH: '~'
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SCRATCH: '~'
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NXF_GLOBAL_CONFIG: ~/dummy.config
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NXF_GLOBAL_CONFIG: ~/dummy.config
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run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}
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run: |
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echo $SCRATCH
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echo $NXF_GLOBAL_CONFIG
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nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}
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