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This commit is contained in:
Piotr Faba 2020-05-27 16:35:55 +02:00
parent ab3070582e
commit ff5fdd097b
1 changed files with 5 additions and 1 deletions
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6
.github/workflows/main.yml vendored
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@ -23,9 +23,13 @@ jobs:
run: | run: |
wget -qO- get.nextflow.io | bash wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/ sudo mv nextflow /usr/local/bin/
echo ~
touch ~/dummy.config touch ~/dummy.config
- name: Check ${{ matrix.profile }} profile - name: Check ${{ matrix.profile }} profile
env: env:
SCRATCH: '~' SCRATCH: '~'
NXF_GLOBAL_CONFIG: ~/dummy.config NXF_GLOBAL_CONFIG: ~/dummy.config
run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }} run: |
echo $SCRATCH
echo $NXF_GLOBAL_CONFIG
nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}