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Author SHA1 Message Date
Alexander Peltzer
37c6714cc7
Nice prince 2019-11-26 14:29:52 +01:00
Alexander Peltzer
2ebd2180ed
Add in SCRATCH env 2019-11-26 14:27:22 +01:00
phue
bdf4a829b8 roll out iGenomes on cbe 2019-11-26 14:22:16 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Maxime Garcia
68c709432f
Apply suggestions from code review 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-11-26 14:17:32 +01:00
Alexander Peltzer
47ac2085f7
Better names 2019-11-26 14:12:41 +01:00
Alexander Peltzer
0afe00ded5
Generalize name 2019-11-26 14:12:19 +01:00
Alexander Peltzer
c3c7c74d79
Better code 2019-11-26 14:11:16 +01:00
Maxime Garcia
f4115bc1a9
Update README.md 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-11-26 14:10:05 +01:00
Alexander Peltzer
dea11df453
Both on PR and on push 2019-11-26 14:07:25 +01:00
Alexander Peltzer
ebb89f2714
Don't check that anymore 2019-11-26 14:06:30 +01:00
Alexander Peltzer
cfc30418b2
Merge branch 'master' of https://github.com/apeltzer/configs 2019-11-26 14:05:09 +01:00
Alexander Peltzer
9caf9821c9
Use strip 2019-11-26 14:04:58 +01:00
Alexander Peltzer
d592c79954
Merge branch 'master' into master 2019-11-26 13:59:06 +01:00
Alexander Peltzer
cb876594a3
Proper user tests now :-) 2019-11-26 13:57:32 +01:00
Noirot Céline
42d99e7006
Update genotoul.md 2019-11-26 13:18:34 +01:00
MaxUlysse
f9fe789ef4 update README 2019-11-26 12:01:01 +01:00
Maxime Garcia
89e6d8cd27 Update conf/munin.config 2019-11-26 12:00:54 +01:00
MaxUlysse
89de9a799e improve syntax 2019-11-26 12:00:48 +01:00
MaxUlysse
52cacd6c97 Update README.md 
Update README.md

Co-Authored-By: James A. Fellows Yates <jfy133@users.noreply.github.com># This is a combination of 2 commits.

Update README.md

Update README.md

Co-Authored-By: James A. Fellows Yates <jfy133@users.noreply.github.com>
 2019-11-26 12:00:40 +01:00
Maxime Garcia
6c516282bc Update README.md 2019-11-26 12:00:21 +01:00
MaxUlysse
d1c4ba89bd actually belong to nf-core/configs/munin 2019-11-26 11:59:35 +01:00
MaxUlysse
ebdfc2a768 fix container/module collision 2019-11-26 11:59:00 +01:00
Maxime Garcia
880551d246 Apply suggestions from code review 2019-11-26 11:58:13 +01:00
Maxime Garcia
f6c2e4c65f Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config

testing out module and containers collision
 2019-11-26 11:57:51 +01:00
Maxime Garcia
9d23f7a266 Update conf/pipeline/sarek/munin.config 2019-11-26 11:56:02 +01:00
MaxUlysse
25d4e92935 update docs 2019-11-26 11:55:36 +01:00
Maxime Garcia
83f677216b Update pipeline/sarek.config 2019-11-26 11:54:18 +01:00
MaxUlysse
45cec1ac2f Add specific sarek config base, munin specific sarek config and docs 
rename file

improve configs

remove unnecessary params
 2019-11-26 11:52:53 +01:00
MaxUlysse
209763620a update README 2019-11-26 11:48:29 +01:00
MaxUlysse
028008c1d0 improve syntax 2019-11-26 11:48:29 +01:00
Maxime Garcia
93d5156c7d Update conf/munin.config 2019-11-26 11:48:29 +01:00
Maxime Garcia
29f0442c3a Update README.md 
Co-Authored-By: James A. Fellows Yates <jfy133@users.noreply.github.com>
 2019-11-26 11:48:29 +01:00
MaxUlysse
e98f74e47b actually belong to nf-core/configs/munin 2019-11-26 11:48:29 +01:00
MaxUlysse
edde1ee64d fix container/module collision 2019-11-26 11:48:29 +01:00
Maxime Garcia
9a57e487d7 Apply suggestions from code review 2019-11-26 11:48:29 +01:00
Maxime Garcia
b029ccaa59 Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config
 2019-11-26 11:48:11 +01:00
Maxime Garcia
73047968cf Update conf/pipeline/sarek/munin.config 2019-11-26 11:25:29 +01:00
MaxUlysse
283abcece4 update docs 2019-11-26 11:25:29 +01:00
Maxime Garcia
43f6f55ba2 Update pipeline/sarek.config 2019-11-26 11:25:29 +01:00
MaxUlysse
25f6ab6dd9 add docs 2019-11-26 11:25:29 +01:00
MaxUlysse
cd1d0b5f8f Add specific sarek config base, munin specific sarek config and docs 
rename file

improve configs

remove unnecessary params
 2019-11-26 11:25:29 +01:00
Alexander Peltzer
00db62416f
Merge pull request #89 from MaxUlysse/AWSBATCH 
Fix issues with awsbatch profile
 2019-11-26 11:23:15 +01:00
Maxime Garcia
1ce8ce0c55
Apply suggestions from code review 2019-11-26 11:00:24 +01:00
MaxUlysse
75c1fd5cd9 fix tests 2019-11-26 10:43:23 +01:00
Alexander Peltzer
7e3efcac5c
Enjoy 2019-11-26 00:59:09 +01:00
Alexander Peltzer
b60fa8109e
Shift some configs to params scope 2019-11-26 00:57:10 +01:00
Alexander Peltzer
3d7f5436b1
Its in workflows 2019-11-26 00:54:17 +01:00
Alexander Peltzer
5a1dbf2dc7
Rename configs tests 2019-11-26 00:52:39 +01:00
Alexander Peltzer
4062c8b4dc
Fix indentation 2019-11-26 00:51:08 +01:00