328 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Alexander Peltzer	2ebd2180ed	Add in SCRATCH env	2019-11-26 14:27:22 +01:00
Alexander Peltzer	47ac2085f7	Better names	2019-11-26 14:12:41 +01:00
Alexander Peltzer	0afe00ded5	Generalize name	2019-11-26 14:12:19 +01:00
Alexander Peltzer	c3c7c74d79	Better code	2019-11-26 14:11:16 +01:00
Alexander Peltzer	dea11df453	Both on PR and on push	2019-11-26 14:07:25 +01:00
Alexander Peltzer	ebb89f2714	Don't check that anymore	2019-11-26 14:06:30 +01:00
Alexander Peltzer	cfc30418b2	Merge branch 'master' of https://github.com/apeltzer/configs	2019-11-26 14:05:09 +01:00
Alexander Peltzer	9caf9821c9	Use strip	2019-11-26 14:04:58 +01:00
Alexander Peltzer	d592c79954	Merge branch 'master' into master	2019-11-26 13:59:06 +01:00
Alexander Peltzer	cb876594a3	Proper user tests now :-)	2019-11-26 13:57:32 +01:00
Alexander Peltzer	00db62416f	Merge pull request #89 from MaxUlysse/AWSBATCH ... Fix issues with awsbatch profile	2019-11-26 11:23:15 +01:00
Maxime Garcia	1ce8ce0c55	Apply suggestions from code review	2019-11-26 11:00:24 +01:00
MaxUlysse	75c1fd5cd9	fix tests	2019-11-26 10:43:23 +01:00
Alexander Peltzer	7e3efcac5c	Enjoy	2019-11-26 00:59:09 +01:00
Alexander Peltzer	b60fa8109e	Shift some configs to params scope	2019-11-26 00:57:10 +01:00
Alexander Peltzer	3d7f5436b1	Its in workflows	2019-11-26 00:54:17 +01:00
Alexander Peltzer	5a1dbf2dc7	Rename configs tests	2019-11-26 00:52:39 +01:00
Alexander Peltzer	4062c8b4dc	Fix indentation	2019-11-26 00:51:08 +01:00
Alexander Peltzer	aeb2fb6dc0	Fix all the markdownlinting errors	2019-11-26 00:48:17 +01:00
Alexander Peltzer	2d16917473	Fix linting	2019-11-26 00:34:55 +01:00
Alexander Peltzer	64a3240a51	Fix linting	2019-11-26 00:29:04 +01:00
Alexander Peltzer	b084b9ad3c	Adds in GitHub Actions tests	2019-11-26 00:25:49 +01:00
Maxime Garcia	a283c5b7c4	Merge pull request #71 from MaxUlysse/master ... Add profiles that should be shared with all pipelines to configs	2019-11-19 19:43:50 +01:00
MaxUlysse	cb1c2eacd0	Z->S	2019-11-19 16:36:51 +01:00
MaxUlysse	08a6b74825	add new profile to be shared: awsbatch	2019-11-19 14:16:06 +01:00
Alexander Peltzer	bc9ecf50ac	Update binac.config ... Upgrade to 3.4.2	2019-11-11 13:56:17 +01:00
Alexander Peltzer	e66ca6f670	Merge pull request #83 from nf-core/cfc_new_singularity_test ... Update Singularity to 3.4.2 on CFC	2019-11-11 13:55:01 +01:00
Alexander Peltzer	fd7bdecfb7	Merge pull request #84 from apeltzer/master ... Fix denbi docs	2019-11-11 12:29:11 +01:00
Alexander Peltzer	3b6c9d0360	Fix denbi docs	2019-11-11 12:28:45 +01:00
Alexander Peltzer	f19ddb847d	Merge pull request #79 from apeltzer/master ... Fix for BinAC profile / resources etc pp	2019-11-11 12:26:45 +01:00
Alexander Peltzer	d2603a134e	Add in denbi cloud configs	2019-11-11 12:26:19 +01:00
Alexander Peltzer	426017d727	Merge remote-tracking branch 'upstream/master'	2019-11-11 12:21:53 +01:00
Phil Ewels	6790dbd4a3	Merge pull request #82 from arontommi/dev ... documentation on how to fix bianca "Requested node configuration is not available" problem	2019-11-08 15:07:07 +01:00
Phil Ewels	5e7d13df89	Update uppmax.md	2019-11-08 10:59:34 +01:00
Alexander Peltzer	16a0ba9fd5	Update cfc.config	2019-11-08 10:06:23 +01:00
arontommi	99f4d9b9bd	documentation on how to fix bianca cluster configuration problem	2019-11-06 13:10:09 +01:00
James A. Fellows Yates	ebbf884ac5	Merge pull request #81 from maxibor/master ... Update shh doc	2019-10-28 20:02:27 +01:00
maxibor	47a7d57db4	update shh doc	2019-10-28 16:09:00 +01:00
Alexander Peltzer	84178c2550	Merge pull request #80 from phue/remove_mendel ... MENDEL is no more	2019-10-28 14:45:18 +01:00
phue	5a9dbe5d7c	MENDEL is no more ... the cluster is no longer operational, was replaced by CBE	2019-10-28 14:11:34 +01:00
Alexander Peltzer	eb6d23254d	Fix binac resources	2019-10-28 13:22:12 +01:00
Alexander Peltzer	e557ced184	Update max memory	2019-10-28 13:21:41 +01:00
Alexander Peltzer	06bd1ab79e	Merge branch 'master' into master	2019-10-28 13:21:08 +01:00
Alexander Peltzer	41e607e7f9	Fix expression	2019-10-28 13:17:39 +01:00
Alexander Peltzer	494aa8b53e	Mini fix	2019-10-28 13:15:54 +01:00
Alexander Peltzer	9299355890	Merge pull request #78 from nf-core/revert-43-master ... Revert "BINAC SMP / Short / Long Updates"	2019-10-28 13:12:42 +01:00
Alexander Peltzer	5348b8c609	Revert "BINAC SMP / Short / Long Updates"	2019-10-28 13:12:31 +01:00
Alexander Peltzer	7951805fbf	Merge pull request #43 from apeltzer/master ... BINAC SMP / Short / Long Updates	2019-10-28 13:09:56 +01:00
Alexander Peltzer	83fcc0b2ba	Adjust max memory	2019-10-28 13:09:30 +01:00
Harshil Patel	b23e9d5a9f	Merge pull request #77 from phue/igenomesIgnore_deprecated ... deprecate igenomesIgnore in favor of igenomes_ignore	2019-10-28 11:05:48 +00:00