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Author SHA1 Message Date
Maxime Garcia
64ff62de2c
Merge pull request #85 from MaxUlysse/sarek 
Adding a pipeline specific config for a specific system
 2019-11-27 13:38:45 +01:00
Maxime Garcia
2669401a72
Merge branch 'master' into sarek 2019-11-27 13:27:43 +01:00
MaxUlysse
752fca0530 fix level of hostname 2019-11-27 13:25:52 +01:00
MaxUlysse
7f61d2f81b fix TOC 2019-11-27 13:18:39 +01:00
MaxUlysse
8a73e7f2f8 better explanation 2019-11-27 13:16:08 +01:00
Alexander Peltzer
5e0e3e0567
Merge pull request #96 from jfy133/master 
Splitting SHH config to one per cluster
 2019-11-27 12:06:54 +01:00
Alexander Peltzer
54719c4761
Merge pull request #95 from ggabernet/master 
Update max memory for cfc profile
 2019-11-26 21:21:07 +01:00
James A. Fellows Yates
c725c71e4d
Merge branch 'master' into master 2019-11-26 20:34:42 +01:00
jfy133
e1c8c86d70 Updated core config 2019-11-26 20:26:59 +01:00
jfy133
c89ca84244 Updated github actions test - typo fix 2019-11-26 20:24:23 +01:00
jfy133
e6bf470962 Updated github actions test 2019-11-26 20:23:04 +01:00
jfy133
6f40c13473 Split shh config for each cluster 2019-11-26 20:20:17 +01:00
Patrick Hüther
8a9c321e44
Merge pull request #90 from phue/cbe_iGenomes 
cbe: roll out iGenomes
 2019-11-26 18:15:30 +01:00
phue
672f025639 cbe: add documentation about iGenomes 2019-11-26 18:09:20 +01:00
phue
88b5be3060 Merge branch 'master' of https://github.com/nf-core/configs into cbe_iGenomes 2019-11-26 18:08:43 +01:00
ggabernet
834f4b4179 updated memory cfc config 2019-11-26 17:30:41 +01:00
Gisela Gabernet
55d8e8aca8
Merge pull request #1 from nf-core/master 
update to nf-core
 2019-11-26 17:12:53 +01:00
Alexander Peltzer
ee99d7f2d4
Merge pull request #94 from apeltzer/master 
Mini Cosmetic Fixes for README
 2019-11-26 16:24:30 +01:00
Alexander Peltzer
b756ce54a4
Add genotoul fix 2019-11-26 16:09:08 +01:00
Alexander Peltzer
81739a3907
Merge pull request #93 from jfy133/master 
Updated max resources for SHH SDAG
 2019-11-26 15:56:39 +01:00
Alexander Peltzer
da922b8005
Fix README 2019-11-26 15:45:33 +01:00
Alexander Peltzer
5806cd14e8
Merge branch 'master' of https://github.com/nf-core/configs 2019-11-26 15:36:07 +01:00
James A. Fellows Yates
89506a653c
Remove empty lines in block quotes for linting 2019-11-26 15:34:25 +01:00
Alexander Peltzer
caa979f102
Merge pull request #86 from genotoul-bioinfo/master 
Add genotoul config
 2019-11-26 15:31:02 +01:00
James A. Fellows Yates
12ec22838c
Specified max sources currently at SDAG limits (exceeds cdag) 2019-11-26 15:29:03 +01:00
James A. Fellows Yates
c3d27099ca
Updated authors 2019-11-26 15:26:05 +01:00
James A. Fellows Yates
ca6ddcadb0
Matching max CPUs to SDAG (supercruncher8) 2019-11-26 15:25:35 +01:00
James A. Fellows Yates
c7c8c096f8
Merge pull request #4 from nf-core/master 
Syncing
 2019-11-26 15:24:44 +01:00
MaxUlysse
6f638b7ad4 Merge branch 'sarek' of github.com:MaxUlysse/nf-core_configs into sarek 2019-11-26 15:22:02 +01:00
MaxUlysse
25f3bd68f8 container = null 2019-11-26 15:21:53 +01:00
Alexander Peltzer
9e6e4343d7
Merge branch 'master' into master 2019-11-26 15:13:32 +01:00
Alexander Peltzer
9cb5137ef2
Better description 2019-11-26 15:12:42 +01:00
Phil Ewels
171c103e20
Merge pull request #92 from apeltzer/master 
GithubActions: Ignore CZI Profiles for now
 2019-11-26 15:11:49 +01:00
Noirot Céline
0fdcf8c70c
Update .github/workflows/main.yml 
Co-Authored-By: Alexander Peltzer <apeltzer@users.noreply.github.com>
 2019-11-26 15:10:13 +01:00
Alexander Peltzer
5c39c1ed1a
Merge branch 'master' into master 2019-11-26 15:07:31 +01:00
noirot
07b1f17d6a correct md to pass linter 2019-11-26 15:02:06 +01:00
noirot
3d8da62db3 add genotoul profile name to the build matrix 2019-11-26 14:57:17 +01:00
Noirot Céline
3ed206b7a7
Update docs/genotoul.md 
ok

Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:52:45 +01:00
Noirot Céline
288294994e
Update docs/genotoul.md 
ok

Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:52:32 +01:00
Noirot Céline
611c318569
Update conf/genotoul.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:50:05 +01:00
Noirot Céline
dd4ff452da
Update conf/genotoul.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:49:47 +01:00
noirot
e95196451f correct md to pass linter 2019-11-26 14:47:23 +01:00
noirot
42c949db95 correct md to pass linter 2019-11-26 14:43:42 +01:00
Alexander Peltzer
bac91d03fa
Ignore czi stuff for now 2019-11-26 14:38:57 +01:00
Alexander Peltzer
8ca2e808b4
Merge pull request #91 from apeltzer/master 
Fix Github Actions tests
 2019-11-26 14:34:53 +01:00
Alexander Peltzer
37c6714cc7
Nice prince 2019-11-26 14:29:52 +01:00
Alexander Peltzer
2ebd2180ed
Add in SCRATCH env 2019-11-26 14:27:22 +01:00
phue
bdf4a829b8 roll out iGenomes on cbe 2019-11-26 14:22:16 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Maxime Garcia
68c709432f
Apply suggestions from code review 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-11-26 14:17:32 +01:00