MaxUlysse
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73fcc4495a
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feat: update owner of profile
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2021-05-19 20:46:52 +02:00 |
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Gisela Gabernet
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4e9e5d2c67
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Merge branch 'master' into cfc_sarek
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2021-04-23 16:47:04 +02:00 |
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ameynert
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e5f2a63079
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Java overhead processes list updated
Added all processes calling GATK for Mutect2 variant calling
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2021-03-30 16:21:53 +01:00 |
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ameynert
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adfb5366b9
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Java overhead process list updated
Added HaplotypeCaller and GenotypeGVCFs to set of processes that need Java overhead
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2021-03-30 16:15:17 +01:00 |
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ameyner2
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da8cf2f207
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Added pipeline-specific config files for rnaseq and sarek
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2021-03-24 10:46:26 +00:00 |
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Rike
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6221b67bcf
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Give Strelka a complete compute node
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2021-03-18 11:11:02 +01:00 |
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Rike
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b1846af9d3
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reduce mapping resource further to compute node
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2021-03-18 11:10:00 +01:00 |
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FriederikeHanssen
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67c93a4743
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Update conf/pipeline/sarek/cfc.config
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
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2021-03-18 11:06:38 +01:00 |
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Rike
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b70097e495
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remove new line
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2021-03-17 15:46:18 +01:00 |
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Rike
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bb124a9be8
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Reduce vc to run on compute
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2021-03-11 16:11:41 +01:00 |
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FriederikeHanssen
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79ddbe1fea
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Add missing bracket
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2021-03-11 09:29:03 +01:00 |
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FriederikeHanssen
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0057132e02
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remove check_reource statement
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2021-03-11 09:27:08 +01:00 |
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FriederikeHanssen
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eb9012919c
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Set values for processes with max_mem/max_cpus
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2021-03-10 11:16:18 +01:00 |
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MaxUlysse
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8c0cc4b9ec
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code polishing
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2020-09-25 09:57:50 +02:00 |
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MaxUlysse
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81f910cc95
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add specific BamQC config
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2020-09-25 09:49:43 +02:00 |
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MaxUlysse
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fbe7bd133a
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update uppmax specific sarek config
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2020-09-25 08:33:53 +02:00 |
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Alexander Peltzer
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f877644059
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Merge branch 'master' into master
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2020-05-29 11:43:47 +02:00 |
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Maxime Garcia
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34dc18faf6
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Update uppmax.config
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2020-04-09 11:35:37 +02:00 |
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Adrian Larkeryd
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405801638a
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icr_davros sarek config description
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2020-04-08 11:56:17 +01:00 |
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MaxUlysse
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db2dd4458b
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Merge remote-tracking branch 'upstream/master' into UPPMAX
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2020-03-30 16:41:08 +02:00 |
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MaxUlysse
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8b570507cd
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update s
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2020-03-30 16:40:11 +02:00 |
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Maxime Garcia
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123132d89a
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Update munin.config
fix typo
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2020-03-12 17:23:55 +01:00 |
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Maxime Garcia
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b6d52fdb89
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Update conf/pipeline/sarek/munin.config
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2020-03-11 15:48:29 +01:00 |
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MaxUlysse
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dd1ddf864b
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update sarek munin config
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2020-03-11 14:01:28 +01:00 |
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Adrian Larkeryd
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a882b6cbaa
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adding icr_davros config files generic and sarek
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2020-03-04 15:00:33 +00:00 |
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Maxime Garcia
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9a8bb12020
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Update conf/pipeline/sarek/uppmax.config
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2020-02-27 17:22:03 +01:00 |
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Maxime Garcia
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8acbdacf03
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Update conf/pipeline/sarek/uppmax.config
Co-Authored-By: Johannes Alneberg <johannes.alneberg@scilifelab.se>
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2020-02-27 17:21:03 +01:00 |
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Maxime Garcia
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09ff8f5790
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Update conf/pipeline/sarek/uppmax.config
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2020-02-27 17:02:31 +01:00 |
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Maxime Garcia
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17d6a7e922
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Update conf/pipeline/sarek/uppmax.config
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2020-02-27 17:02:13 +01:00 |
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Maxime Garcia
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ab8998e12b
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Update uppmax.config
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2020-02-27 16:52:51 +01:00 |
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MaxUlysse
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9f74e88041
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update file
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2020-02-24 14:36:45 +01:00 |
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MaxUlysse
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aa905cd645
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add UPPMAX specific sarek config
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2020-02-20 17:14:18 +01:00 |
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MaxUlysse
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2bf66514c5
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fix issue with withLabel selector
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2019-12-12 11:50:10 +01:00 |
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MaxUlysse
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25f3bd68f8
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container = null
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2019-11-26 15:21:53 +01:00 |
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MaxUlysse
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ebdfc2a768
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fix container/module collision
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2019-11-26 11:59:00 +01:00 |
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Maxime Garcia
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880551d246
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Apply suggestions from code review
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2019-11-26 11:58:13 +01:00 |
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Maxime Garcia
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f6c2e4c65f
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Update docs/pipeline/sarek/munin.md
Update conf/pipeline/sarek/munin.config
testing out module and containers collision
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2019-11-26 11:57:51 +01:00 |
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Maxime Garcia
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9d23f7a266
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Update conf/pipeline/sarek/munin.config
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2019-11-26 11:56:02 +01:00 |
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MaxUlysse
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45cec1ac2f
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Add specific sarek config base, munin specific sarek config and docs
rename file
improve configs
remove unnecessary params
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2019-11-26 11:52:53 +01:00 |
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MaxUlysse
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028008c1d0
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improve syntax
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2019-11-26 11:48:29 +01:00 |
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MaxUlysse
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e98f74e47b
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actually belong to nf-core/configs/munin
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2019-11-26 11:48:29 +01:00 |
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MaxUlysse
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edde1ee64d
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fix container/module collision
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2019-11-26 11:48:29 +01:00 |
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Maxime Garcia
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9a57e487d7
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Apply suggestions from code review
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2019-11-26 11:48:29 +01:00 |
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Maxime Garcia
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b029ccaa59
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Update docs/pipeline/sarek/munin.md
Update conf/pipeline/sarek/munin.config
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2019-11-26 11:48:11 +01:00 |
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Maxime Garcia
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73047968cf
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Update conf/pipeline/sarek/munin.config
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2019-11-26 11:25:29 +01:00 |
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MaxUlysse
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cd1d0b5f8f
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Add specific sarek config base, munin specific sarek config and docs
rename file
improve configs
remove unnecessary params
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2019-11-26 11:25:29 +01:00 |
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