James A. Fellows Yates
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c1425c6c01
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Merge pull request #364 from jfy133/eva-update
Update eager @ eva.config to allow retry on post-processing FASTQ
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2022-04-22 11:47:10 +02:00 |
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James A. Fellows Yates
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a086878c0b
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Update eva.config
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2022-04-22 10:47:04 +02:00 |
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Maxime U. Garcia
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e9d93d62e0
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Merge pull request #362 from nf-core/praveenraj2018-patch-1
Update: sentieon version
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2022-04-07 12:52:33 +02:00 |
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Praveen Raj S
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edaad1cd18
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Update: sentieon version
Sentieon version has been updated to 202112.02.
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2022-04-07 12:36:01 +02:00 |
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James A. Fellows Yates
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d49b21efdc
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Merge pull request #361 from jfy133/master
Re-add accidently removed BWA bionode exclusions EAGER @ EVA
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2022-03-31 14:11:54 +02:00 |
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James A. Fellows Yates
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44238471cf
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Update eva.config
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2022-03-31 13:12:50 +02:00 |
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James A. Fellows Yates
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f172cce8b2
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Merge pull request #360 from jfy133/master
Re-add bash bin specification for EVA
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2022-03-31 12:58:06 +02:00 |
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James Fellows Yates
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2277b541a3
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Re-add bash bin specification
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2022-03-31 11:06:53 +02:00 |
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James A. Fellows Yates
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7cad02d327
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Merge pull request #359 from jfy133/fix-eva
Remove -S /bin/bash in clusteroptions for EVA
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2022-03-29 13:51:41 +02:00 |
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James A. Fellows Yates
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8ad4ddac6a
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Merge branch 'master' into fix-eva
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2022-03-29 12:50:54 +02:00 |
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James Fellows Yates
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3d2a612b39
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Remove setting of bash in clusterOotions
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2022-03-29 12:48:37 +02:00 |
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James A. Fellows Yates
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576351219a
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Update eva.config
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2022-03-29 12:47:46 +02:00 |
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James A. Fellows Yates
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9e502025b9
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Merge pull request #358 from aidaanva/master
Update eva.config bigmem.q
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2022-03-28 09:11:18 +02:00 |
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James A. Fellows Yates
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b0c9ac9be8
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Update eva.md
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2022-03-28 09:02:26 +02:00 |
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Phil Ewels
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1f872aea87
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Merge pull request #357 from mahesh-panchal/uppmax-hostname-fix
Execute sinfo with bash shell
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2022-03-25 15:31:09 +01:00 |
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Mahesh Binzer-Panchal
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3a7f7f431e
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Execute sinfo with bash shell
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2022-03-25 13:58:37 +00:00 |
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Aida Andrades Valtueña
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b9da0b4f00
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Update eva.config
Update eva.config to send big memory jobs (>700G) to the bigmem queue
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2022-03-25 09:36:29 +01:00 |
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Phil Ewels
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7d72e8d94b
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Merge pull request #356 from b97pla/uppmax_miarka_config
removed process-specific requirements for sarek, request miarka high-…
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2022-03-24 14:33:06 +01:00 |
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b97pla
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9a6cdfc21e
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removed process-specific requirements for sarek, request miarka high-mem node
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2022-03-24 14:25:43 +01:00 |
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Phil Ewels
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80ec4485b6
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Merge pull request #355 from b97pla/uppmax_miarka_config
added requirements for uppmax cluster miarka
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2022-03-23 16:56:44 +01:00 |
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b97pla
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5466d927f1
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added requirements for uppmax cluster miarka
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2022-03-23 15:29:40 +01:00 |
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Phil Ewels
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2c18f8c5da
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Merge pull request #354 from Emiller88/prettier
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2022-03-23 12:31:41 +01:00 |
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Edmund Miller
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590045be31
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ci: Run linting only once
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2022-03-21 19:23:29 -05:00 |
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Edmund Miller
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ac6c08fbf4
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style: yaml => yml
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2022-03-21 19:23:29 -05:00 |
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Edmund Miller
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c909b36a5e
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style: Allow editorconfig to manage tab widths
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2022-03-21 19:23:29 -05:00 |
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Edmund Miller
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6c37bf3b20
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style: Run prettier
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2022-03-21 19:23:28 -05:00 |
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Edmund Miller
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58da86d729
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ci: Use prettier
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2022-03-21 19:13:59 -05:00 |
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Edmund Miller
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c42ab624c2
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style: Replace markdownlint with prettier
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2022-03-21 19:13:56 -05:00 |
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James A. Fellows Yates
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962d86d604
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Merge pull request #346 from sagc-bioinformatics/sahmri
Added SAHMRI profile
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2022-03-18 13:01:36 +01:00 |
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Nathan S. Watson-Haigh
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30f710ada4
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Add debug profile
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2022-03-17 13:38:43 +10:30 |
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Praveen Raj S
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066a2181cb
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Merge pull request #353 from nf-core/praveenraj2018-patch-1
Added PileupSummariesForMutect2 in CPU limit list
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2022-03-16 14:39:43 +01:00 |
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Praveen Raj S
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1d4f254e43
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Update munin.config
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2022-03-16 14:37:28 +01:00 |
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Praveen Raj S
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9747d5fe15
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Added PileupSummariesForMutect2 in CPU limit list
Add PileupSummariesForMutect2 to the list to run with less threads.
Changed the MaxForks to 12
Tested on an internal sample and it worked!
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2022-03-16 14:36:25 +01:00 |
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Alexander Peltzer
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d510cb254e
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Merge pull request #165 from ewels/fix-show-profiles
Set params.custom_config_base in nextflow.config
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2022-03-15 17:13:24 +01:00 |
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Praveen Raj S
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5828a48ef7
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Merge pull request #351 from nf-core/praveenraj2018-patch-1
Adjusted time and maxforks for Mutect2
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2022-03-15 17:00:09 +01:00 |
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Praveen Raj S
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a844335942
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Update conf/munin.config
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-03-15 16:59:06 +01:00 |
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Praveen Raj S
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cb96c4bd2d
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Update conf/munin.config
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-03-15 16:56:11 +01:00 |
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Praveen Raj S
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13c66f7e98
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Update conf/munin.config
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-03-15 16:56:03 +01:00 |
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Praveen Raj S
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50c4610345
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Adjusted time and maxforks for Mutect2
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2022-03-15 16:29:19 +01:00 |
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Alexander Peltzer
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3e4fae71a4
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Merge branch 'master' into fix-show-profiles
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2022-03-15 14:52:29 +01:00 |
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James A. Fellows Yates
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47bb41a1d8
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Merge pull request #348 from jfy133/eva-update
Update eager @ eva to exclude slow nodes for mapping
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2022-03-15 07:54:52 +01:00 |
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James A. Fellows Yates
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1b5037ce5e
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Update eva.config
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2022-03-15 07:49:06 +01:00 |
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James A. Fellows Yates
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1565b2ce63
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Update eva.config
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2022-03-15 07:42:23 +01:00 |
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James A. Fellows Yates
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f725b6c431
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Apply suggestions from code review
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2022-03-15 07:36:34 +01:00 |
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Nathan S. Watson-Haigh
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a0f5ac7445
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Added references subdir to igenomes_base
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2022-03-15 11:41:51 +10:30 |
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James A. Fellows Yates
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4670f8bf0c
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Update eva.config
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2022-03-14 14:56:01 +01:00 |
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James A. Fellows Yates
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a2e2e94333
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Merge pull request #344 from njspix/vai
Add VAI configuration
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2022-03-14 14:36:00 +01:00 |
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James A. Fellows Yates
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a154738c5e
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Merge pull request #347 from nf-core/pr-template-update
Update PULL_REQUEST_TEMPLATE.md
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2022-03-14 10:11:21 +01:00 |
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James A. Fellows Yates
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b7909c33c8
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Update PULL_REQUEST_TEMPLATE.md
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2022-03-14 08:27:10 +01:00 |
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James A. Fellows Yates
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30d9f82c65
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Merge pull request #138 from Emiller88/pr-templates
chore: add new config PR template
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2022-03-14 08:06:09 +01:00 |
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