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411 commits 4 branches 0 tags 1.9 MiB
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166 commits

Author SHA1 Message Date
Alexander Peltzer
4f77eae5cf
Mini adjustment for highmem queue on denbi 2019-11-27 14:23:01 +01:00
Maxime Garcia
2669401a72
Merge branch 'master' into sarek 2019-11-27 13:27:43 +01:00
Alexander Peltzer
5e0e3e0567
Merge pull request #96 from jfy133/master 
Splitting SHH config to one per cluster
 2019-11-27 12:06:54 +01:00
Alexander Peltzer
54719c4761
Merge pull request #95 from ggabernet/master 
Update max memory for cfc profile
 2019-11-26 21:21:07 +01:00
James A. Fellows Yates
c725c71e4d
Merge branch 'master' into master 2019-11-26 20:34:42 +01:00
jfy133
6f40c13473 Split shh config for each cluster 2019-11-26 20:20:17 +01:00
phue
88b5be3060 Merge branch 'master' of https://github.com/nf-core/configs into cbe_iGenomes 2019-11-26 18:08:43 +01:00
ggabernet
834f4b4179 updated memory cfc config 2019-11-26 17:30:41 +01:00
Alexander Peltzer
ee99d7f2d4
Merge pull request #94 from apeltzer/master 
Mini Cosmetic Fixes for README
 2019-11-26 16:24:30 +01:00
Alexander Peltzer
b756ce54a4
Add genotoul fix 2019-11-26 16:09:08 +01:00
Alexander Peltzer
81739a3907
Merge pull request #93 from jfy133/master 
Updated max resources for SHH SDAG
 2019-11-26 15:56:39 +01:00
James A. Fellows Yates
c3d27099ca
Updated authors 2019-11-26 15:26:05 +01:00
James A. Fellows Yates
ca6ddcadb0
Matching max CPUs to SDAG (supercruncher8) 2019-11-26 15:25:35 +01:00
MaxUlysse
6f638b7ad4 Merge branch 'sarek' of github.com:MaxUlysse/nf-core_configs into sarek 2019-11-26 15:22:02 +01:00
MaxUlysse
25f3bd68f8 container = null 2019-11-26 15:21:53 +01:00
Alexander Peltzer
5c39c1ed1a
Merge branch 'master' into master 2019-11-26 15:07:31 +01:00
Noirot Céline
611c318569
Update conf/genotoul.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:50:05 +01:00
Noirot Céline
dd4ff452da
Update conf/genotoul.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:49:47 +01:00
Alexander Peltzer
37c6714cc7
Nice prince 2019-11-26 14:29:52 +01:00
phue
bdf4a829b8 roll out iGenomes on cbe 2019-11-26 14:22:16 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Maxime Garcia
68c709432f
Apply suggestions from code review 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-11-26 14:17:32 +01:00
Alexander Peltzer
d592c79954
Merge branch 'master' into master 2019-11-26 13:59:06 +01:00
MaxUlysse
ebdfc2a768 fix container/module collision 2019-11-26 11:59:00 +01:00
Maxime Garcia
880551d246 Apply suggestions from code review 2019-11-26 11:58:13 +01:00
Maxime Garcia
f6c2e4c65f Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config

testing out module and containers collision
 2019-11-26 11:57:51 +01:00
Maxime Garcia
9d23f7a266 Update conf/pipeline/sarek/munin.config 2019-11-26 11:56:02 +01:00
MaxUlysse
45cec1ac2f Add specific sarek config base, munin specific sarek config and docs 
rename file

improve configs

remove unnecessary params
 2019-11-26 11:52:53 +01:00
MaxUlysse
028008c1d0 improve syntax 2019-11-26 11:48:29 +01:00
Maxime Garcia
93d5156c7d Update conf/munin.config 2019-11-26 11:48:29 +01:00
MaxUlysse
e98f74e47b actually belong to nf-core/configs/munin 2019-11-26 11:48:29 +01:00
MaxUlysse
edde1ee64d fix container/module collision 2019-11-26 11:48:29 +01:00
Maxime Garcia
9a57e487d7 Apply suggestions from code review 2019-11-26 11:48:29 +01:00
Maxime Garcia
b029ccaa59 Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config
 2019-11-26 11:48:11 +01:00
Maxime Garcia
73047968cf Update conf/pipeline/sarek/munin.config 2019-11-26 11:25:29 +01:00
MaxUlysse
cd1d0b5f8f Add specific sarek config base, munin specific sarek config and docs 
rename file

improve configs

remove unnecessary params
 2019-11-26 11:25:29 +01:00
Maxime Garcia
1ce8ce0c55
Apply suggestions from code review 2019-11-26 11:00:24 +01:00
MaxUlysse
75c1fd5cd9 fix tests 2019-11-26 10:43:23 +01:00
Alexander Peltzer
b60fa8109e
Shift some configs to params scope 2019-11-26 00:57:10 +01:00
Noirot Céline
ed4436c1a6
Merge branch 'master' into master 2019-11-25 16:24:12 +01:00
noirot
db51c49b2f Add genotoul config 2019-11-25 14:54:25 +01:00
MaxUlysse
08a6b74825 add new profile to be shared: awsbatch 2019-11-19 14:16:06 +01:00
Alexander Peltzer
bc9ecf50ac
Update binac.config 
Upgrade to 3.4.2
 2019-11-11 13:56:17 +01:00
Alexander Peltzer
e66ca6f670
Merge pull request #83 from nf-core/cfc_new_singularity_test 
Update Singularity to 3.4.2 on CFC
 2019-11-11 13:55:01 +01:00
Alexander Peltzer
d2603a134e
Add in denbi cloud configs 2019-11-11 12:26:19 +01:00
Alexander Peltzer
426017d727
Merge remote-tracking branch 'upstream/master' 2019-11-11 12:21:53 +01:00
Alexander Peltzer
16a0ba9fd5
Update cfc.config 2019-11-08 10:06:23 +01:00
phue
5a9dbe5d7c MENDEL is no more 
the cluster is no longer operational, was replaced by CBE
 2019-10-28 14:11:34 +01:00
Alexander Peltzer
eb6d23254d
Fix binac resources 2019-10-28 13:22:12 +01:00
Alexander Peltzer
e557ced184
Update max memory 2019-10-28 13:21:41 +01:00