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Author SHA1 Message Date
James A. Fellows Yates
c7c8c096f8
Merge pull request #4 from nf-core/master 
Syncing
 2019-11-26 15:24:44 +01:00
MaxUlysse
6f638b7ad4 Merge branch 'sarek' of github.com:MaxUlysse/nf-core_configs into sarek 2019-11-26 15:22:02 +01:00
MaxUlysse
25f3bd68f8 container = null 2019-11-26 15:21:53 +01:00
Alexander Peltzer
9e6e4343d7
Merge branch 'master' into master 2019-11-26 15:13:32 +01:00
Alexander Peltzer
9cb5137ef2
Better description 2019-11-26 15:12:42 +01:00
Phil Ewels
171c103e20
Merge pull request #92 from apeltzer/master 
GithubActions: Ignore CZI Profiles for now
 2019-11-26 15:11:49 +01:00
Noirot Céline
0fdcf8c70c
Update .github/workflows/main.yml 
Co-Authored-By: Alexander Peltzer <apeltzer@users.noreply.github.com>
 2019-11-26 15:10:13 +01:00
Alexander Peltzer
5c39c1ed1a
Merge branch 'master' into master 2019-11-26 15:07:31 +01:00
noirot
07b1f17d6a correct md to pass linter 2019-11-26 15:02:06 +01:00
noirot
3d8da62db3 add genotoul profile name to the build matrix 2019-11-26 14:57:17 +01:00
Noirot Céline
3ed206b7a7
Update docs/genotoul.md 
ok

Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:52:45 +01:00
Noirot Céline
288294994e
Update docs/genotoul.md 
ok

Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:52:32 +01:00
Noirot Céline
611c318569
Update conf/genotoul.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:50:05 +01:00
Noirot Céline
dd4ff452da
Update conf/genotoul.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:49:47 +01:00
noirot
e95196451f correct md to pass linter 2019-11-26 14:47:23 +01:00
noirot
42c949db95 correct md to pass linter 2019-11-26 14:43:42 +01:00
Alexander Peltzer
bac91d03fa
Ignore czi stuff for now 2019-11-26 14:38:57 +01:00
Alexander Peltzer
8ca2e808b4
Merge pull request #91 from apeltzer/master 
Fix Github Actions tests
 2019-11-26 14:34:53 +01:00
Alexander Peltzer
37c6714cc7
Nice prince 2019-11-26 14:29:52 +01:00
Alexander Peltzer
2ebd2180ed
Add in SCRATCH env 2019-11-26 14:27:22 +01:00
phue
bdf4a829b8 roll out iGenomes on cbe 2019-11-26 14:22:16 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Maxime Garcia
68c709432f
Apply suggestions from code review 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-11-26 14:17:32 +01:00
Alexander Peltzer
47ac2085f7
Better names 2019-11-26 14:12:41 +01:00
Alexander Peltzer
0afe00ded5
Generalize name 2019-11-26 14:12:19 +01:00
Alexander Peltzer
c3c7c74d79
Better code 2019-11-26 14:11:16 +01:00
Maxime Garcia
f4115bc1a9
Update README.md 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-11-26 14:10:05 +01:00
Alexander Peltzer
dea11df453
Both on PR and on push 2019-11-26 14:07:25 +01:00
Alexander Peltzer
ebb89f2714
Don't check that anymore 2019-11-26 14:06:30 +01:00
Alexander Peltzer
cfc30418b2
Merge branch 'master' of https://github.com/apeltzer/configs 2019-11-26 14:05:09 +01:00
Alexander Peltzer
9caf9821c9
Use strip 2019-11-26 14:04:58 +01:00
Alexander Peltzer
d592c79954
Merge branch 'master' into master 2019-11-26 13:59:06 +01:00
Alexander Peltzer
cb876594a3
Proper user tests now :-) 2019-11-26 13:57:32 +01:00
Noirot Céline
42d99e7006
Update genotoul.md 2019-11-26 13:18:34 +01:00
MaxUlysse
f9fe789ef4 update README 2019-11-26 12:01:01 +01:00
Maxime Garcia
89e6d8cd27 Update conf/munin.config 2019-11-26 12:00:54 +01:00
MaxUlysse
89de9a799e improve syntax 2019-11-26 12:00:48 +01:00
MaxUlysse
52cacd6c97 Update README.md 
Update README.md

Co-Authored-By: James A. Fellows Yates <jfy133@users.noreply.github.com># This is a combination of 2 commits.

Update README.md

Update README.md

Co-Authored-By: James A. Fellows Yates <jfy133@users.noreply.github.com>
 2019-11-26 12:00:40 +01:00
Maxime Garcia
6c516282bc Update README.md 2019-11-26 12:00:21 +01:00
MaxUlysse
d1c4ba89bd actually belong to nf-core/configs/munin 2019-11-26 11:59:35 +01:00
MaxUlysse
ebdfc2a768 fix container/module collision 2019-11-26 11:59:00 +01:00
Maxime Garcia
880551d246 Apply suggestions from code review 2019-11-26 11:58:13 +01:00
Maxime Garcia
f6c2e4c65f Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config

testing out module and containers collision
 2019-11-26 11:57:51 +01:00
Maxime Garcia
9d23f7a266 Update conf/pipeline/sarek/munin.config 2019-11-26 11:56:02 +01:00
MaxUlysse
25d4e92935 update docs 2019-11-26 11:55:36 +01:00
Maxime Garcia
83f677216b Update pipeline/sarek.config 2019-11-26 11:54:18 +01:00
MaxUlysse
45cec1ac2f Add specific sarek config base, munin specific sarek config and docs 
rename file

improve configs

remove unnecessary params
 2019-11-26 11:52:53 +01:00
MaxUlysse
209763620a update README 2019-11-26 11:48:29 +01:00
MaxUlysse
028008c1d0 improve syntax 2019-11-26 11:48:29 +01:00
Maxime Garcia
93d5156c7d Update conf/munin.config 2019-11-26 11:48:29 +01:00