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763 B
763 B
Cedars-Sinai Medical Center HPC
- You will need HPC access from EIS, which can be requested in the Service Center.
- You will need to load the nextflow module on the HPC before running any pipelines (
module load nextflow). This should automatically load Java as well. - Run this with
-profile cedars - By default this config file does not specify a queue for submission, and things will thus go to
all.q. Because of that, the memory and cpu limits have been set accordingly. - We highly recommend specifying a location of a cache directory to store singularity images (so you re-use them across runs, and not pull each time), by specifying the location with the
$NXF_SINGULARITY_CACHE_DIRbash environment variable in your.bash_profileor.bashrc