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nf-core/configs: eva eager specific configuration
Extra specific configuration for eager pipeline
Usage
To use, run the pipeline with -profile eva.
This will download and launch the eager specific eva.config which has been pre-configured with a setup suitable for the MPI-EVA cluster.
Example: nextflow run nf-core/eager -profile eva
eager specific configurations for eva
Specific configurations for eva has been made for eager.
General profiles
- The general MPI-EVA profile runs with default nf-core/eager parameters, but with modifications to account for issues SGE have with Java tools.
big_data
- This defines larger base computing resources for when working with very deep sequenced or high-endogenous samples.
Contextual profiles
Human Pop-Gen
human: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as-l 16500, -n 0.01)
Pathogen
pathogen_loose: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as-l 16 -n 0.01)pathogen_strict: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as-l 32, -n 0.1)