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nf-configs/docs/pipeline/rnafusion/hasta.md

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nf-core/configs: HASTA rnafusion specific configuration

Extra specific configuration for rnafusion pipeline

Usage

To use, run the pipeline with -profile hasta.

This will download and launch the rnafusion specific hasta.config which has been pre-configured with a setup suitable for the HASTA cluster.

Example: nextflow run nf-core/rnafusion -profile hasta

rnafusion specific configurations for HASTA

Specific configurations for HASTA has been made for rnafusion.

  • Always run all the analysis steps (all = true)
  • Use trimming (trim = true)
  • Take the fusions identified by at least 2 fusion detection tools to the fusioninspector analysis (fusioninspector_filter = true)