mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-22 16:29:55 +00:00
22 lines
1.1 KiB
Markdown
22 lines
1.1 KiB
Markdown
# nf-core/configs: MUNIN Configuration
|
|
|
|
All nf-core pipelines have been successfully configured for use on the MUNIN cluster.
|
|
|
|
To use, run the pipeline with `-profile munin`.
|
|
This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster.
|
|
Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline.
|
|
|
|
Example: `nextflow run -profile munin`
|
|
|
|
## Docker
|
|
|
|
It is also possible to execute the pipeline using Docker.
|
|
|
|
Example: `nextflow run -profile munin,docker`
|
|
|
|
## Below are non-mandatory information on iGenomes specific configuration
|
|
|
|
A local copy of the iGenomes resource has been made available on the MUNIN cluster so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline.
|
|
You can do this by simply using the `--genome <GENOME_ID>` parameter.
|
|
|
|
>NB: You will need an account to use the MUNIN cluster in order to run the pipeline. If in doubt contact @szilva.
|