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28 lines
759 B
Text
28 lines
759 B
Text
singularityDir = "/athena/elementolab/scratch/reference/.singularity/singularity_images_nextflow"
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params {
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config_profile_description = 'Weill Cornell Medicine, Scientific Computing Unit Slurm cluster profile provided by nf-core/configs'
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config_profile_contact = 'Ashley Stephen Doane, PhD (@DoaneAS)'
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igenomes_base = '/athena/elementolab/scratch/reference/igenomes'
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}
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singularity {
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enabled = true
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envWhitelist='SINGULARITY_BINDPATH'
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cacheDir = "/athena/elementolab/scratch/reference/.singularity/singularity_images_nextflow"
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autoMounts = true
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}
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process {
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executor = 'slurm'
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queue = 'panda_physbio'
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scratch = true
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scratch = '/scratchLocal/`whoami`_${SLURM_JOBID}'
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}
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params {
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max_memory = 32.GB
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max_cpus = 8
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max_time = 24.h
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}
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