1.1 KiB
nf-core/configs: maestro eager specific configuration
Extra specific configuration for eager pipeline for human DNA data processing
Usage
To use, run the pipeline with -profile maestro,<qos>,<type>, where can be normal or long and can be nuclear or mitochondrial
This will download and launch the eager specific maestro.config which has been pre-configured with a setup suitable for the Maestro cluster.
Example: nextflow run nf-core/eager -profile maestro,normal,nuclear
eager specific configurations for maestro
Specific configurations for maestro has been made for eager.
We decided not to provide any Tool parameter here and focus the profile only for ressource management: Maestro profiles runs with default nf-core/eager parameters, but with modifications concerning time (limit to 24h in normal qos so increasing the memnory and CPUs, specially for alignments).
nuclear
Increases the number of CPUs and the amount of memory for key processes
##mitochondrial
more limited computational ressources