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nf-configs/docs/pipeline/eager/shh.md
2019-12-05 17:03:07 +01:00

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# nf-core/configs: shh eager specific configuration
Extra specific configuration for eager pipeline
## Usage
To use, run the pipeline with `-profile shh`.
This will download and launch the eager specific [`shh.config`](../conf/pipeline/eager/shh.config) which has been pre-configured with a setup suitable for the shh cluster.
Example: `nextflow run nf-core/eager -profile shh`
## eager specific configurations for shh
Specific configurations for shh has been made for eager.
* Running with the MALT module turned on, will by default be sent either to long or supercruncher queues with a minimum of 756GB and 64 cores.