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nf-configs/docs/pipeline/sarek/sage.md
Bruno Grande 1c7230cb08 Add Sage-specific Sarek config
2022-06-23 09:15:42 -07:00

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nf-core/configs: Sage Bionetworks Sarek-Specific Configuration

To use this custom configuration, run the pipeline with -profile sage. This will download and load the sage.config, which contains a number of optimizations relevant to Sage employees running workflows on AWS (e.g. using Nextflow Tower). This profile will also load any applicable pipeline-specific configuration.

In addition to the global configuration described here, this Sarek-specific configuration includes the following tweaks:

  • Define the check_max() function, which is missing in Sarek v2.