mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-27 10:09:56 +00:00
19 lines
871 B
Markdown
19 lines
871 B
Markdown
# nf-core/configs Maestro (at Pateur Institute, Paris) Configuration
|
|
|
|
To use, run the pipeline with `-profile maestro,<qos>` (with qos being long or normal). This will download and launch the maestro.config which has been pre-configured with a setup suitable for the Maestro cluster on either the long or normal qos.
|
|
Using one of these profiles, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline
|
|
|
|
## needed Modules
|
|
|
|
Please first load java, nextflow and singularity modules
|
|
`module load java`
|
|
`module load nextflow`
|
|
`module load singularity`
|
|
|
|
Also, do not forget to run nextflow using tmux or alike.
|
|
|
|
## Other profiles at Pasteur
|
|
|
|
If you are using TARS cluster, please refer to pasteur profile.
|
|
|
|
Please refer to docs/pasteur.md for installing and running nf-core instructions.
|