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860 B
860 B
nf-core/configs: Imperial scflow Specific Configuration
Extra specific configuration for the scflow pipeline
Usage
To use, run the pipeline with -profile imperial
or -profile imperial_mb
.
This will download and launch the scflow specific imperial.config
which has been pre-configured with a setup suitable for the Imperial HPC cluster.
Example: nextflow run nf-core/scflow -profile imperial
scflow specific configurations for Imperial
Specific configurations for Imperial have been made for scflow.
- Singularity
enabled
andautoMounts
set totrue
- Singularity
cacheDir
path set to an RDS location - Singularity
runOptions
path set to bind (-B
) RDS paths with container paths. - Params
ctd_folder
set to an RDS location. - Parms
ensembl_mappings
set to an RDS location.