mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-27 10:09:56 +00:00
19 lines
765 B
Markdown
19 lines
765 B
Markdown
# nf-core/configs: eva taxprofiler specific configuration
|
|
|
|
Extra specific configuration for taxprofiler pipeline
|
|
|
|
## Usage
|
|
|
|
To use, run the pipeline with `-profile eva`.
|
|
|
|
This will download and launch the taxprofiler specific [`eva.config`](../../../conf/pipeline/taxprofiler/eva.config) which has been pre-configured with a setup suitable for the MPI-EVA cluster.
|
|
|
|
Example: `nextflow run nf-core/taxprofiler -profile eva`
|
|
|
|
## taxprofiler specific configurations for eva
|
|
|
|
Specific configurations for eva has been made for taxprofiler.
|
|
|
|
### General profiles
|
|
|
|
- The general MPI-EVA profile runs with default nf-core/taxprofiler parameters, but with modifications to account for issues SGE have with Java and python tools, nameling: BBDUK, MALT, MetaPhlAn3, and MEGAN
|