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nf-configs/docs/pipeline/sarek/uppmax.md
Edmund Miller 6c37bf3b20
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nf-core/configs: uppmax sarek specific configuration

Extra specific configuration for sarek pipeline

Usage

To use, run the pipeline with -profile uppmax.

This will download and launch the sarek specific uppmax.config which has been pre-configured with a setup suitable for uppmax clusters.

Example: nextflow run nf-core/sarek -profile uppmax

Sarek specific configurations for uppmax clusters

Specific configurations for uppmax clusters has been made for sarek.

  • Set paths to reference genomes
  • Set path to singularity containers for irma