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21 lines
No EOL
747 B
Markdown
21 lines
No EOL
747 B
Markdown
# nf-core/configs: MUNIN sarek specific configuration
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Extra specific configuration for sarek pipeline
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## Usage
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To use, run the pipeline with `-profile munin`.
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This will download and launch the [`munin.config`](../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster.
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Example: `nextflow run nf-core/sarek -profile munin`
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## Sarek specific configurations for Munin
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Specific configurations for Munin has been made for sarek.
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* Path to `snpEff_cache`: `/data1/cache/snpEff/`
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* Path to `vep_cache`: `/data1/cache/VEP/`
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* Path to `pon`: `/data1/PON/vcfs/BTB.PON.vcf.gz`
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* Path to `pon_index`: `/data1/PON/vcfs/BTB.PON.vcf.gz.tbi`
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* Load module `Sentieon` for Process with `sentieon` labels |