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30 lines
1.3 KiB
Markdown
30 lines
1.3 KiB
Markdown
# nf-core/configs maestro eager specific configuration
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Extra specific configuration for eager pipeline for human DNA data processing
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## Usage
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To use, run the pipeline with `-profile maestro,<qos>,<type>`, where qos can be normal or long and type can be nuclear or mitochondrial
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This will download and launch the eager specific [`maestro.config`](../../../conf/pipeline/eager/maestro.config) which has been pre-configured with a setup suitable for the Maestro cluster.
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Example: `nextflow run nf-core/eager -profile maestro,normal,nuclear`
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## eager specific configurations for maestro
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Specific configurations for maestro has been made for eager.
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We decided not to provide any tool parameters here, and focus the profile only for resource management: Maestro profiles runs with default nf-core/eager parameters, but with modifications concerning time (limit to 24h in normal qos, so increasing the memory and CPUs, specially for alignments).
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## nuclear
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Increases the number of CPUs and the amount of memory for key processes
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## mitochondrial
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More limited computational resources
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## unlimitedtime
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Every process has one year time limit. To be used only when some processes can not be completed for time reasons when using mitochondrial or nuclear profiles.
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Expect slow processes when using this profile because only 5 CPUs are available at a time.
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