nf-configs/docs/azurebatch.md

nf-core/configs: azurebatch Configuration

To be used with the azurebatch profile by specifying the -profile azurebatch when running nf-core pipelines. Custom queue and storage need to be supplied with params.az_location, params.batch_name, params.batch_key, params.storage_name, params.sas_token.

Required Parameters

--az_location

The Azure Batch region where the computation is executed in VMs. Default (westus2).

--batch_name

The Azure Batch account name.

--batch_key

The Azure Batch account key.

--storage_name

The Azure Blob Storage name.

--sas_token

The Azure Blob Storage shared access signature token.

-w

The Azure Blob container to be used as Nextflow work directory (-w az://work).

Azure Batch Setup

Please refer to the Nextflow documentation which describe how to setup the Azure Batch environment.